By comparing life history and genetic data across a broad taxonomic range of species. Genodive version 3.0 is a user-friendly program for the analysis of population genetic data. design controlled for many sampling and geographical factors. This version presents a major update from the previous version and now offers a wide spectrum of different types of analyses. GenoDive has an intuitive Graphical User Interface that allows direct manipulation of the data though transformation, imputation of missing data, and excluding and including individuals. Genodive has an intuitive graphical user interface that allows direct manipulation of the data through transformation, imputation of missing data, and exclusion and inclusion of individuals, population and/or loci. A unique feature of genodive is that it can also open data sets with nongenetic variables, for example environmental. The first line of the file is a comment line, which is written to the Description slot of the genambig object. read.GenoDive imports data from text files formatted for this program. Furthermore, genodive seamlessly supports 15 different file formats for importing or exporting data from or to other programs. GenoDive is a Mac-only program for population genetic analysis that allows for polyploid data. Variance is a measure of dispersion and can be defined as the spread of data from the mean of the given dataset. One major feature of genodive is that it supports both diploid and polyploid data, up to octaploidy (2n = 8x) for some analyses, but up to hexadecaploidy (2n = 16x) for other analyses. Furthermore, genodive seamlessly supports 15 different file formats for importing or exporting data from or to other programs. GENODIVE SAMPLE DATA MATRIX FULL GENODIVE SAMPLE DATA MATRIX FULL Finally, I randomly sampled 10,000 columns (SNPs) from the full data set, which is what we. The different types of analyses offered by genodive include multiple statistics for estimating population differentiation (φ ST, F ST, F' ST, G ST, G' ST, G'' ST, D est, R ST, ρ), analysis of molecular variance-based K-means clustering, Hardy-Weinberg equilibrium, hybrid index, population assignment, clone assignment, Mantel test, Spatial Autocorrelation, 23 ways of calculating genetic distances, and both principal components and principal coordinates analyses. (38), the genotype data were scored as haploid and for the 0.6 of heterozygous genotypes. A unique feature of genodive is that it can also open data sets with nongenetic variables, for example environmental data or geographical coordinates that can be included in the analysis. N, number of analyzed shoots ccorrected for sample size.
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